1 #Author: Pierre Ratinaud
2 #Copyright (c) 20010 Pierre Ratinaud
6 #fichier genere par IRaMuTeq
19 do.select.chi.classe <- %s
38 xlab <- paste('facteur ', x, ' -')
39 ylab <- paste('facteur ', y, ' -')
40 if (!typegraph == 0) {zlab <- paste('facteur ', z, ' -')}
41 xlab <- paste(xlab,round(afc_table$facteur[x,2],2),sep = ' ')
42 xlab <- paste(xlab,' %%',sep = '')
43 ylab <- paste(ylab,round(afc_table$facteur[y,2],2),sep = ' ')
44 ylab <- paste(ylab,' %%',sep = '')
45 if (!typegraph == 0) {
46 zlab <- paste(zlab,round(afc_table$facteur[z,2],2),sep = ' ')
47 zlab <- paste(zlab,' %%',sep = '')
51 if ( what == 0 ) table.in <- afc$colcoord
52 if ( what == 1 ) table.in <- afc$colcrl
53 rownames(table.in) <- afc$colnames
55 table.in<-table.in[,c(x,y)]
57 table.in<-table.in[,c(x,y,z)]
58 rx <- range(table.in[,1], na.rm = TRUE)
59 ry <- range(table.in[,2], na.rm = TRUE)
60 rz <- range(table.in[,3], na.rm = TRUE)
64 cex.par <- rep(taillecar/10, nrow(table.in))
66 if ( what == 0 ) table.in <- afc$rowcoord
67 if ( what == 1 ) table.in <- afc$rowcrl
68 rownames(table.in) <- afc$rownames
69 tablechi <- chistabletot
72 table.in<-table.in[,c(x,y)]
74 table.in<-table.in[,c(x,y,z)]
75 rx <- range(table.in[,1], na.rm = TRUE)
76 ry <- range(table.in[,2], na.rm = TRUE)
77 rz <- range(table.in[,3], na.rm = TRUE)
79 if (!is.null(debsup)) {
81 table.in <- table.in[1:(debsup-1),]
82 tablechi <- tablechi[1:(debsup-1),]
83 cex.par <- afc$rowmass[1:(debsup-1)]
86 table.in <- table.in[debsup:(debet-1),]
87 tablechi <- tablechi[debsup:(debet-1),]
88 #cex.par <- afc$rowmass[debsup:(debet-1)]
91 table.in <- table.in[debet:nrow(table.in),]
92 tablechi <- tablechi[debet:nrow(tablechi),]
93 #cex.par <- afc$rowmass[debet:nrow(tablechi)]
97 if (is.null(debsup)) {
99 if (!is.null(debet)) {
100 table.in <- table.in[1:(debet-1),]
101 tablechi <- tablechi[1:(debet-1),]
102 cex.par <- afc$rowmass[1:(debet-1)]
104 cex.par <- afc$rowmass
107 table.in <- table.in[debet:nrow(table.in),]
108 tablechi <- tablechi[debet:nrow(tablechi),]
109 #cex.par <- afc$rowmass[debet:nrow(tablechi)]
114 if (select.nb > nrow(table.in)) select.nb <- nrow(table.in)
115 row.keep <- select_point_nb(tablechi, select.nb)
116 table.in <- table.in[row.keep,]
117 tablechi <- tablechi[row.keep,]
118 } else if (do.select.chi) {
119 if (select.chi > max(tablechi)) select.chi <- max(tablechi)
120 row.keep <- select_point_chi(tablechi, select.chi)
121 table.in <- table.in[row.keep,]
122 tablechi <- tablechi[row.keep,]
123 } else if (do.select.chi.classe) {
124 row.keep <- select.chi.classe(tablechi, ptbycluster)
125 table.in <- table.in[row.keep,]
126 tablechi <- tablechi[row.keep,]
128 row.keep <- 1:nrow(table.in)
130 classes <- apply(tablechi, 1, which.max)
131 maxchi <- apply(tablechi, 1, max)
132 infp <- which(is.infinite(maxchi) & maxchi > 0)
135 valmax <- max(maxchi, na.rm = TRUE)
136 maxchi[infp] <- valmax + 2
139 #row.keep <- append(row.keep, rn.keep)
140 #row.keep <- unique(row.keep)
141 cex.par <- cex.par[row.keep]
142 cex.par <- norm.vec(cex.par, txt.min/10, txt.max/10)
145 cex.par <- norm.vec(cex.par, tchi.min/10, tchi.max/10)
147 cex.par <- rep(taillecar/10, nrow(table.in))
151 if (is.null(xminmax)) {
152 xminmax <- c(min(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,1], na.rm = TRUE)), max(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,1], na.rm = TRUE)))
154 if (is.null(yminmax)) {
155 yminmax <- c(min(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,2], na.rm = TRUE)), max(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,2], na.rm = TRUE)))
158 if (typegraph == 0) {
160 open_file_graph(fileout, width = width, height = height, svg = do.svg)
161 parcex <- taillecar/10
164 table.in <- table.in[order(cex.par, decreasing = TRUE),]
165 classes <- classes[order(cex.par, decreasing = TRUE)]
166 cex.par <- cex.par[order(cex.par, decreasing = TRUE)]
167 table.in <- stopoverlap(table.in, cex.par=cex.par, xlim = xminmax, ylim = yminmax)
168 classes <- classes[table.in[,4]]
169 cex.par <- cex.par[table.in[,4]]
171 make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par, xminmax = xminmax, yminmax = yminmax)
175 vire.nonascii <- function(rnames) {
176 print('vire non ascii')
177 couple <- list(c('é','e'),
198 rnames<-gsub(c[1],c[2], rnames)
203 #rn <- vire.nonascii(rownames(table.in))
204 rn <- rownames(table.in)
207 #par3d(windowRect = c(100,100,600,600))
208 rgl.bg(col = c('white', "#99bb99"), front = "lines", box=FALSE, sphere = TRUE)
209 rgl.lines(c(rx), c(0, 0), c(0, 0), col = "#000000")
210 rgl.lines(c(0,0),c(ry),c(0,0),col = "#000000")
211 rgl.lines(c(0,0),c(0,0),c(rz),col = "#000000")
212 text3d(rx[2]+1,0,0, xlab)
213 text3d(0,ry[2]+1,0, ylab)
214 text3d(0,0,rz[2]+1, zlab)
217 maxchi <- norm.vec(maxchi, tchi.min/100, tchi.max/100)
218 } else if (!is.null(cex.par)) {
219 maxchi <- norm.vec(cex.par, txt.min/100, txt.max/100)
223 colors = rain[classes]
224 text3d(table.in[,1], table.in[,2], table.in[,3], rn, col= colors , cex = cex.par)
226 text3d(rx[2],(ry[2]+(0.2*i)),0,paste('classe',i),col=rain[i])
229 # rgl.spheres(table.in, col = colors, radius = maxchi, alpha = alpha)
234 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour commencer le film",icon="info",type="ok")
236 movie3d(spin3d(axis=c(0,1,0),rpm=6), movie = 'film', frames = "tmpfilm", duration=10, clean=TRUE, top = TRUE, dir = dirout)
237 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Fini !",icon="info",type="ok")
241 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour fermer",icon="info",type="ok")