1 #Author: Pierre Ratinaud
2 #Copyright (c) 20010 Pierre Ratinaud
6 #fichier genere par IRaMuTeq
19 do.select.chi.classe <- %s
38 xlab <- paste('facteur ', x, ' -')
39 ylab <- paste('facteur ', y, ' -')
40 if (!typegraph == 0) {zlab <- paste('facteur ', z, ' -')}
41 xlab <- paste(xlab,round(afc_table$facteur[x,2],2),sep = ' ')
42 xlab <- paste(xlab,' %%',sep = '')
43 ylab <- paste(ylab,round(afc_table$facteur[y,2],2),sep = ' ')
44 ylab <- paste(ylab,' %%',sep = '')
45 if (!typegraph == 0) {
46 zlab <- paste(zlab,round(afc_table$facteur[z,2],2),sep = ' ')
47 zlab <- paste(zlab,' %%',sep = '')
51 if ( what == 0 ) table.in <- afc$colcoord
52 if ( what == 1 ) table.in <- afc$colcrl
53 rownames(table.in) <- afc$colnames
55 table.in<-table.in[,c(x,y)]
57 table.in<-table.in[,c(x,y,z)]
58 rx <- range(table.in[,1], na.rm = TRUE)
59 ry <- range(table.in[,2], na.rm = TRUE)
60 rz <- range(table.in[,3], na.rm = TRUE)
64 cex.par <- rep(taillecar/10, nrow(table.in))
66 if ( what == 0 ) table.in <- afc$rowcoord
67 if ( what == 1 ) table.in <- afc$rowcrl
68 rownames(table.in) <- afc$rownames
69 tablechi <- chistabletot
72 table.in<-table.in[,c(x,y)]
74 table.in<-table.in[,c(x,y,z)]
75 rx <- range(table.in[,1], na.rm = TRUE)
76 ry <- range(table.in[,2], na.rm = TRUE)
77 rz <- range(table.in[,3], na.rm = TRUE)
79 eff <- rowSums(afctable)
80 if (!is.null(debsup)) {
82 table.in <- table.in[1:(debsup-1),]
83 tablechi <- tablechi[1:(debsup-1),]
84 cex.par <- eff[1:(debsup-1)]
87 table.in <- table.in[debsup:(debet-1),]
88 tablechi <- tablechi[debsup:(debet-1),]
89 cex.par <- eff[debsup:(debet-1)]
92 table.in <- table.in[debet:nrow(table.in),]
93 tablechi <- tablechi[debet:nrow(tablechi),]
94 cex.par <- eff[debet:nrow(afctable)]
98 if (is.null(debsup)) {
100 if (!is.null(debet)) {
101 table.in <- table.in[1:(debet-1),]
102 tablechi <- tablechi[1:(debet-1),]
103 cex.par <- eff[1:(debet-1)]
108 table.in <- table.in[debet:nrow(table.in),]
109 tablechi <- tablechi[debet:nrow(tablechi),]
110 cex.par <- eff[debet:nrow(afctable)]
115 if (select.nb > nrow(table.in)) select.nb <- nrow(table.in)
116 row.keep <- select_point_nb(tablechi, select.nb)
117 table.in <- table.in[row.keep,]
118 tablechi <- tablechi[row.keep,]
119 } else if (do.select.chi) {
120 if (select.chi > max(tablechi)) select.chi <- max(tablechi)
121 row.keep <- select_point_chi(tablechi, select.chi)
122 table.in <- table.in[row.keep,]
123 tablechi <- tablechi[row.keep,]
124 } else if (do.select.chi.classe) {
125 row.keep <- select.chi.classe(tablechi, ptbycluster)
126 table.in <- table.in[row.keep,]
127 tablechi <- tablechi[row.keep,]
129 row.keep <- 1:nrow(table.in)
131 classes <- apply(tablechi, 1, which.max)
132 maxchi <- apply(tablechi, 1, max)
133 infp <- which(is.infinite(maxchi) & maxchi > 0)
136 if (!length(infp) == length(maxchi)) {
137 valmax <- max(maxchi, na.rm = TRUE)
141 maxchi[infp] <- valmax + 2
144 #row.keep <- append(row.keep, rn.keep)
145 #row.keep <- unique(row.keep)
146 cex.par <- cex.par[row.keep]
147 cex.par <- norm.vec(cex.par, txt.min/10, txt.max/10)
150 cex.par <- norm.vec(cex.par, tchi.min/10, tchi.max/10)
152 cex.par <- rep(taillecar/10, nrow(table.in))
156 if (is.null(xminmax)) {
157 xminmax <- c(min(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,1], na.rm = TRUE)), max(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,1], na.rm = TRUE)))
159 if (is.null(yminmax)) {
160 yminmax <- c(min(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,2], na.rm = TRUE)), max(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,2], na.rm = TRUE)))
163 if (typegraph == 0) {
165 open_file_graph(fileout, width = width, height = height, svg = do.svg)
166 parcex <- taillecar/10
169 table.in <- table.in[order(cex.par, decreasing = TRUE),]
170 classes <- classes[order(cex.par, decreasing = TRUE)]
171 cex.par <- cex.par[order(cex.par, decreasing = TRUE)]
172 table.in <- stopoverlap(table.in, cex.par=cex.par, xlim = xminmax, ylim = yminmax)
173 classes <- classes[table.in[,4]]
174 cex.par <- cex.par[table.in[,4]]
176 make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par, xminmax = xminmax, yminmax = yminmax)
180 vire.nonascii <- function(rnames) {
181 print('vire non ascii')
182 couple <- list(c('é','e'),
203 rnames<-gsub(c[1],c[2], rnames)
208 #rn <- vire.nonascii(rownames(table.in))
209 rn <- rownames(table.in)
212 #par3d(windowRect = c(100,100,600,600))
213 rgl.bg(col = c('white', "#99bb99"), front = "lines", box=FALSE, sphere = TRUE)
214 rgl.lines(c(rx), c(0, 0), c(0, 0), col = "#000000")
215 rgl.lines(c(0,0),c(ry),c(0,0),col = "#000000")
216 rgl.lines(c(0,0),c(0,0),c(rz),col = "#000000")
217 text3d(rx[2]+1,0,0, xlab)
218 text3d(0,ry[2]+1,0, ylab)
219 text3d(0,0,rz[2]+1, zlab)
222 maxchi <- norm.vec(maxchi, tchi.min/100, tchi.max/100)
223 } else if (!is.null(cex.par)) {
224 maxchi <- norm.vec(cex.par, txt.min/100, txt.max/100)
228 colors = rain[classes]
229 text3d(table.in[,1], table.in[,2], table.in[,3], rn, col= colors , cex = cex.par)
231 text3d(rx[2],(ry[2]+(0.2*i)),0,paste('classe',i),col=rain[i])
234 # rgl.spheres(table.in, col = colors, radius = maxchi, alpha = alpha)
239 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour commencer le film",icon="info",type="ok")
241 movie3d(spin3d(axis=c(0,1,0),rpm=6), movie = 'film', frames = "tmpfilm", duration=10, clean=TRUE, top = TRUE, dir = dirout)
242 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Fini !",icon="info",type="ok")
246 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour fermer",icon="info",type="ok")