1 #Author: Pierre Ratinaud
2 #Copyright (c) 20010 Pierre Ratinaud
6 #fichier genere par IRaMuTeq
19 do.select.chi.classe <- %s
37 xlab <- paste('facteur ', x, ' -')
38 ylab <- paste('facteur ', y, ' -')
39 if (!typegraph == 0) {zlab <- paste('facteur ', z, ' -')}
40 xlab <- paste(xlab,round(afc_table$facteur[x,2],2),sep = ' ')
41 xlab <- paste(xlab,' %%',sep = '')
42 ylab <- paste(ylab,round(afc_table$facteur[y,2],2),sep = ' ')
43 ylab <- paste(ylab,' %%',sep = '')
44 if (!typegraph == 0) {
45 zlab <- paste(zlab,round(afc_table$facteur[z,2],2),sep = ' ')
46 zlab <- paste(zlab,' %%',sep = '')
50 if ( what == 0 ) table.in <- afc$colcoord
51 if ( what == 1 ) table.in <- afc$colcrl
52 rownames(table.in) <- afc$colnames
54 table.in<-table.in[,c(x,y)]
56 table.in<-table.in[,c(x,y,z)]
57 rx <- range(table.in[,1], na.rm = TRUE)
58 ry <- range(table.in[,2], na.rm = TRUE)
59 rz <- range(table.in[,3], na.rm = TRUE)
63 cex.par <- rep(taillecar/10, nrow(table.in))
65 if ( what == 0 ) table.in <- afc$rowcoord
66 if ( what == 1 ) table.in <- afc$rowcrl
67 rownames(table.in) <- afc$rownames
68 tablechi <- chistabletot
71 table.in<-table.in[,c(x,y)]
73 table.in<-table.in[,c(x,y,z)]
74 rx <- range(table.in[,1], na.rm = TRUE)
75 ry <- range(table.in[,2], na.rm = TRUE)
76 rz <- range(table.in[,3], na.rm = TRUE)
78 if (!is.null(debsup)) {
80 table.in <- table.in[1:(debsup-1),]
81 tablechi <- tablechi[1:(debsup-1),]
82 cex.par <- afc$rowmass[1:(debsup-1)]
85 table.in <- table.in[debsup:(debet-1),]
86 tablechi <- tablechi[debsup:(debet-1),]
87 #cex.par <- afc$rowmass[debsup:(debet-1)]
90 table.in <- table.in[debet:nrow(table.in),]
91 tablechi <- tablechi[debet:nrow(tablechi),]
92 #cex.par <- afc$rowmass[debet:nrow(tablechi)]
96 if (is.null(debsup)) {
98 if (!is.null(debet)) {
99 table.in <- table.in[1:(debet-1),]
100 tablechi <- tablechi[1:(debet-1),]
101 cex.par <- afc$rowmass[1:(debet-1)]
103 cex.par <- afc$rowmass
106 table.in <- table.in[debet:nrow(table.in),]
107 tablechi <- tablechi[debet:nrow(tablechi),]
108 #cex.par <- afc$rowmass[debet:nrow(tablechi)]
113 if (select.nb > nrow(table.in)) select.nb <- nrow(table.in)
114 row.keep <- select_point_nb(tablechi, select.nb)
115 table.in <- table.in[row.keep,]
116 tablechi <- tablechi[row.keep,]
117 } else if (do.select.chi) {
118 if (select.chi > max(tablechi)) select.chi <- max(tablechi)
119 row.keep <- select_point_chi(tablechi, select.chi)
120 table.in <- table.in[row.keep,]
121 tablechi <- tablechi[row.keep,]
122 } else if (do.select.chi.classe) {
123 row.keep <- select.chi.classe(tablechi, ptbycluster)
124 table.in <- table.in[row.keep,]
125 tablechi <- tablechi[row.keep,]
127 row.keep <- 1:nrow(table.in)
129 classes <- apply(tablechi, 1, which.max)
130 maxchi <- apply(tablechi, 1, max)
131 infp <- which(is.infinite(maxchi) & maxchi > 0)
134 valmax <- max(maxchi, na.rm = TRUE)
135 maxchi[infp] <- valmax + 2
138 #row.keep <- append(row.keep, rn.keep)
139 #row.keep <- unique(row.keep)
140 cex.par <- cex.par[row.keep]
141 cex.par <- norm.vec(cex.par, txt.min/10, txt.max/10)
144 cex.par <- norm.vec(cex.par, tchi.min/10, tchi.max/10)
146 cex.par <- rep(taillecar/10, nrow(table.in))
150 if (is.null(xminmax)) {
151 xminmax <- c(min(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,1], na.rm = TRUE)), max(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,1], na.rm = TRUE)))
153 if (is.null(yminmax)) {
154 yminmax <- c(min(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,2], na.rm = TRUE)), max(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,2], na.rm = TRUE)))
157 if (typegraph == 0) {
159 open_file_graph(fileout, width = width, height = height)
160 parcex <- taillecar/10
163 table.in <- table.in[order(cex.par, decreasing = TRUE),]
164 classes <- classes[order(cex.par, decreasing = TRUE)]
165 cex.par <- cex.par[order(cex.par, decreasing = TRUE)]
166 table.in <- stopoverlap(table.in, cex.par=cex.par, xlim = xminmax, ylim = yminmax)
167 classes <- classes[table.in[,4]]
168 cex.par <- cex.par[table.in[,4]]
170 make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par, xminmax = xminmax, yminmax = yminmax)
174 vire.nonascii <- function(rnames) {
175 print('vire non ascii')
176 couple <- list(c('é','e'),
197 rnames<-gsub(c[1],c[2], rnames)
202 #rn <- vire.nonascii(rownames(table.in))
203 rn <- rownames(table.in)
206 #par3d(windowRect = c(100,100,600,600))
207 rgl.bg(col = c('white', "#99bb99"), front = "lines", box=FALSE, sphere = TRUE)
208 rgl.lines(c(rx), c(0, 0), c(0, 0), col = "#000000")
209 rgl.lines(c(0,0),c(ry),c(0,0),col = "#000000")
210 rgl.lines(c(0,0),c(0,0),c(rz),col = "#000000")
211 text3d(rx[2]+1,0,0, xlab)
212 text3d(0,ry[2]+1,0, ylab)
213 text3d(0,0,rz[2]+1, zlab)
216 maxchi <- norm.vec(maxchi, tchi.min/100, tchi.max/100)
217 } else if (!is.null(cex.par)) {
218 maxchi <- norm.vec(cex.par, txt.min/100, txt.max/100)
222 colors = rain[classes]
223 text3d(table.in[,1], table.in[,2], table.in[,3], rn, col= colors , cex = cex.par)
225 text3d(rx[2],(ry[2]+(0.2*i)),0,paste('classe',i),col=rain[i])
228 # rgl.spheres(table.in, col = colors, radius = maxchi, alpha = alpha)
233 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour commencer le film",icon="info",type="ok")
235 movie3d(spin3d(axis=c(0,1,0),rpm=6), movie = 'film', frames = "tmpfilm", duration=10, clean=TRUE, top = TRUE, dir = dirout)
236 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Fini !",icon="info",type="ok")
240 ReturnVal <- tkmessageBox(title="RGL 3 D",message="Cliquez pour fermer",icon="info",type="ok")