chronological analysis of clusters

[iramuteq] / analysematrix.py

diff --git a/analysematrix.py b/analysematrix.py
index 2a3c88d..5daf6ae 100644 (file)
--- a/analysematrix.py
+++ b/analysematrix.py
@@ -2,64 +2,82 @@
 # -*- coding: utf-8 -*-
 #Author: Pierre Ratinaud
 #Copyright (c) 2013 Pierre Ratinaud
-#Lisense: GNU GPL
+#License: GNU GPL
 
 
 
 import logging
 import os
-from time import time
 from uuid import uuid4
-
-
 from chemins import PathOut
-from functions import exec_rcode, check_Rresult, DoConf
+from functions import exec_rcode, check_Rresult, DoConf, progressbar
 from time import time, sleep
 from openanalyse import OpenAnalyse
 
+
 class AnalyseMatrix :
-    def __init__(self, ira, tableau, parametres = None, dlg = False) :
+    def __init__(self, ira, tableau, parametres = None, dlg = None) :
         self.tableau = tableau
+        if self.tableau.csvtable is None :
+            self.tableau.open()
         self.ira = ira
         self.parent = ira
         self.dlg = dlg
         self.parametres = parametres
         self.val = False
         if not 'pathout' in self.parametres :
-            self.pathout = PathOut(tableau.parametres['filename'], analyse_type = parametres['type'], dirout = parametres['pathout'])
+            self.parametres['pathout'] = PathOut(tableau.parametres['originalpath'], analyse_type = self.parametres['type'], dirout = tableau.parametres['pathout']).mkdirout()
+            self.pathout = PathOut(analyse_type = self.parametres['type'], dirout = self.parametres['pathout'])
         else :
-            self.pathout = PathOut(filename = tableau.parametres['filename'], dirout = self.parametres['pathout'], analyse_type = self.parametres['type'])
+            self.pathout = PathOut(filename = tableau.parametres['originalpath'], dirout = self.parametres['pathout'], analyse_type = self.parametres['type'])
 
-        self.parametres['pathout'] = self.pathout.dirout
+        #self.parametres['pathout'] = self.pathout.dirout
         self.parametres['uuid'] = str(uuid4())
         self.parametres['name'] = os.path.split(self.parametres['pathout'])[1]
         self.parametres['encoding'] = self.ira.syscoding
-
-        self.t1 = time()
-        result_analyse = self.doanalyse()
+        self.parametres['matrix'] = self.tableau.parametres['uuid']
+        self.tableau.pathout.dirout = self.parametres['pathout']
+        self.doparametres(dlg = dlg)
+        if self.dlg is not None :
+            self.dlg = progressbar(self.ira, self.dlg)
+        if self.parametres is not None :
+            self.t1 = time()
+            if not os.path.exists(self.parametres['pathout']) :
+                self.pathout.createdir(self.parametres['pathout'])
+            result_analyse = self.doanalyse()
+        else :
+            result_analyse = False
         if result_analyse is None :
-            self.time = time() - self.t1
-            minutes, seconds = divmod(self.time, 60)
-            hours, minutes = divmod(minutes, 60)            
-            self.parametres['time'] = '%.0fh %.0fm %.0fs' % (hours, minutes, seconds)
-            self.parametres['ira'] = self.pathout['Analyse.ira']
-            DoConf().makeoptions([self.parametres['type']], [self.parametres], self.pathout['Analyse.ira'])
-            self.ira.history.addMatrix(self.parametres)
-            if dlg :
-                dlg.Destroy()
-                OpenAnalyse(self.parent, self.parametres['ira'])
-                #self.ira.tree.AddAnalyse(self.parametres)
+            if self.parametres.get('tohistory', True) :
+                self.time = time() - self.t1
+                minutes, seconds = divmod(self.time, 60)
+                hours, minutes = divmod(minutes, 60)            
+                self.parametres['time'] = '%.0fh %.0fm %.0fs' % (hours, minutes, seconds)
+                self.parametres['ira'] = self.pathout['Analyse.ira']
+                DoConf().makeoptions([self.parametres['type']], [self.parametres], self.pathout['Analyse.ira'])
+                self.ira.history.addMatrixAnalyse(self.parametres)
+            if self.dlg is not None :
+                self.dlg.Destroy()
+                if self.parametres.get('tohistory', True) :
+                    OpenAnalyse(self.parent, self.parametres['ira'])
+                    self.ira.tree.AddMatAnalyse(self.parametres)
                 self.val = 5100
         else :
             self.val = False
-            if dlg :
-                dlg.Destroy()
+            if self.dlg is not None :
+                try :
+                    self.dlg.Destroy()
+                except :
+                    pass
  
     def doanalyse(self) :
         pass
     
+    def doparametres(self, dlg = None):
+        pass
+    
     def doR(self, Rscript, wait = False, dlg = None, message = '') :
-        log.info('R code...')
+        #log.info('R code...')
         pid = exec_rcode(self.ira.RPath, Rscript, wait = wait)
         while pid.poll() is None :
             if dlg :