From c36e45979d5de7db91a1652d4001b88843d6d047 Mon Sep 17 00:00:00 2001
From: Pierre Ratinaud <ratinaud@univ-tlse2.fr>
Date: Mon, 3 Nov 2014 09:31:50 +0100
Subject: [PATCH] memory

---
 PrintRScript.py | 32 ++++++++++++++++++--------------
 1 file changed, 18 insertions(+), 14 deletions(-)

diff --git a/PrintRScript.py b/PrintRScript.py
index a4ed14d..120e4ff 100644
--- a/PrintRScript.py
+++ b/PrintRScript.py
@@ -169,10 +169,6 @@ def RchdTxt(DicoPath, RscriptPath, mincl, classif_mode, nbt = 9, svdmethod = 'sv
         txt += """
     chd2<-CHD(data2, x = nbt, mode.patate = mode.patate, svd.method = svd.method, libsvdc.path = libsvdc.path)
     """
-    else:
-        txt += """
-    chd2<-chd1
-    """    
     
     txt += """
     #lecture des uce
@@ -203,8 +199,10 @@ def RchdTxt(DicoPath, RscriptPath, mincl, classif_mode, nbt = 9, svdmethod = 'sv
     }
     n1 <- chd.result$n1
     classeuce1 <- chd.result$cuce1
-    classeuce2 <- chd.result$cuce2
-    """ % (classif_mode, mincl, DicoPath['uce'])
+    classes<-n1[,ncol(n1)]
+    write.csv2(n1, file="%s")
+    rm(n1)
+    """ % (classif_mode, mincl, DicoPath['uce'], DicoPath['n1.csv'])
     
     txt += """
     tree.tot1 <- make_tree_tot(chd1)
@@ -215,6 +213,7 @@ def RchdTxt(DicoPath, RscriptPath, mincl, classif_mode, nbt = 9, svdmethod = 'sv
     
     if classif_mode == 0:
         txt += """
+        classeuce2 <- chd.result$cuce2
         tree.tot2 <- make_tree_tot(chd2)
 #        open_file_graph("%s", width = 600, height=400)
 #        plot(tree.tot2$tree.cl)
@@ -224,7 +223,7 @@ def RchdTxt(DicoPath, RscriptPath, mincl, classif_mode, nbt = 9, svdmethod = 'sv
     txt += """
     tree.cut1 <- make_dendro_cut_tuple(tree.tot1$dendro_tuple, chd.result$coord_ok, classeuce1, 1, nbt)
     save(tree.cut1, file="%s")
-    classes<-n1[,ncol(n1)]
+    
     open_file_graph("%s", width = 600, height=400)
     plot.dendropr(tree.cut1$tree.cl,classes, histo=TRUE)
     open_file_graph("%s", width = 600, height=400)
@@ -244,8 +243,10 @@ def RchdTxt(DicoPath, RscriptPath, mincl, classif_mode, nbt = 9, svdmethod = 'sv
         """ % (DicoPath['dendro2'], DicoPath['arbre2'])
         
     txt += """
-    save.image(file="%s")
-    """ % DicoPath['RData']
+    
+    #save.image(file="%s")
+    """ % (DicoPath['RData'])
+    
     fileout = open(DicoPath['Rchdtxt'], 'w')
     fileout.write(txt)
     fileout.close()
@@ -322,8 +323,9 @@ def AlcesteTxtProf(DictChdTxtOut, RscriptsPath, clnb, taillecar):
     txt = "clnb<-%i\n" % clnb
     txt += """
 source("%s")
-load("%s")
-""" % (RscriptsPath['chdfunct'], DictChdTxtOut['RData'])
+#load("%s")
+n1 <- read.csv2("%s")
+""" % (RscriptsPath['chdfunct'], DictChdTxtOut['RData'], DictChdTxtOut['n1.csv'])
     txt += """
 dataact<-read.csv2("%s", header = FALSE, sep = ';',quote = '\"', row.names = 1, na.strings = 'NA')
 datasup<-read.csv2("%s", header = FALSE, sep = ';',quote = '\"', row.names = 1, na.strings = 'NA')
@@ -931,9 +933,11 @@ class PrintSimiScript(PrintRScript) :
             """
         txt += """
         seuil <- %s
-        if (method!='cooc') {
-            seuil <- seuil/100
-        } 
+        if (!is.null(seuil)) {
+            if (method!='cooc') {
+                seuil <- seuil/100
+            } 
+        }
         """ % seuil
         
         txt += """
-- 
2.7.4