plot(tree.cut2$tree.cl)
dev.off()
open_file_graph("%s", width = 600, height=400)
- plot(tree.cut1$dendro_tot_cl)
+ plot(tree.cut2$dendro_tot_cl)
dev.off()
""" % (ffr(DicoPath['dendro2']), ffr(DicoPath['arbre2']))
colnames(result) <- colnames(tgen)
row.names(result) <- rownames(tgen)
write.table(result, file = "%s", sep='\\t', col.names = NA)
- """ % self.pathout['tgenspec.csv']
+ """ % ffr(self.pathout['tgenspec.csv'])
self.add(txt)
+class FreqMultiScript(PrintRScript):
+ def make_script(self):
+ self.sources([self.analyse.parent.RscriptsPath['Rgraph']])
+ txt = """
+ freq <- read.csv2("%s", row.names=1, sep='\\t', dec='.')
+ """ % ffr(self.pathout['frequences.csv'])
+ txt += """
+ toplot <- freq[order(freq[,2]) ,2]
+ toplot.names = rownames(freq)[order(freq[,2])]
+ h <- 80 + (20 * nrow(freq))
+ open_file_graph("%s",height=h, width=500)
+ par(mar=c(3,20,3,3))
+ barplot(toplot, names = toplot.names, horiz=TRUE, las =1, col = rainbow(nrow(freq)))
+ dev.off()
+ """ % ffr(self.pathout['barplotfreq.png'])
+ txt += """
+ toplot <- freq[order(freq[,4]) ,4]
+ toplot.names = rownames(freq)[order(freq[,4])]
+ open_file_graph("%s",height=h, width=500)
+ par(mar=c(3,20,3,3))
+ barplot(toplot, names = toplot.names, horiz=TRUE, las =1, col = rainbow(nrow(freq)))
+ dev.off()
+ """ % ffr(self.pathout['barplotrow.png'])
+ self.add(txt)
+ self.write()
\ No newline at end of file