select.nb <- %i
do.select.chi <- %s
select.chi <- %i
+do.select.chi.classe <- %s
+ptbycluster <- %i
cex.txt <- %s
txt.min <- %i
txt.max <- %i
}
}
- if (over) {
- rn <- rownames(table.in)
- rownames(table.in) <- 1:nrow(table.in)
- table.in <- unique(table.in)
- rn.keep <- as.numeric(rownames(table.in))
- rownames(table.in) <- rn[rn.keep]
- tablechi <- tablechi[rn.keep,]
- if (qui==0) {
- cex.par <- cex.par[rn.keep]
- } else {
- cex.par <- NULL
- }
- }
+# if (over) {
+# rn <- rownames(table.in)
+# rownames(table.in) <- 1:nrow(table.in)
+# table.in <- unique(table.in)
+# rn.keep <- as.numeric(rownames(table.in))
+# rownames(table.in) <- rn[rn.keep]
+# tablechi <- tablechi[rn.keep,]
+# if (qui==0) {
+# cex.par <- cex.par[rn.keep]
+# } else {
+# cex.par <- NULL
+# }
+# }
if (do.select.nb) {
if (select.nb > nrow(table.in)) select.nb <- nrow(table.in)
row.keep <- select_point_nb(tablechi, select.nb)
row.keep <- select_point_chi(tablechi, select.chi)
table.in <- table.in[row.keep,]
tablechi <- tablechi[row.keep,]
+ } else if (do.select.chi.classe) {
+ row.keep <- select.chi.classe(tablechi, ptbycluster)
+ table.in <- table.in[row.keep,]
+ tablechi <- tablechi[row.keep,]
} else {
row.keep <- 1:nrow(table.in)
}
}
}
+
if (typegraph == 0) {
open_file_graph(fileout, width = width, height = height)
parcex <- taillecar/10
par(cex = parcex)
+ if (over) {
+ table.in <- table.in[order(cex.par, decreasing = TRUE),]
+ classes <- classes[order(cex.par, decreasing = TRUE)]
+ cex.par <- cex.par[order(cex.par, decreasing = TRUE)]
+ table.in <- stopoverlap(table.in, cex.par=cex.par)
+ classes <- classes[table.in[,4]]
+ cex.par <- cex.par[table.in[,4]]
+ }
make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par)
} else {