...+++...

[iramuteq] / Rscripts / afc_graph.R

diff --git a/Rscripts/afc_graph.R b/Rscripts/afc_graph.R
index defdab1..e0c2adf 100644 (file)
--- a/Rscripts/afc_graph.R
+++ b/Rscripts/afc_graph.R
@@ -31,6 +31,9 @@ tchi <- %s
 tchi.min <- %i
 tchi.max <- %i
 dirout <- '%s'
+do.svg <- %s
+xminmax <- NULL
+yminmax <- NULL
 
 xlab <- paste('facteur ', x, ' -')
 ylab <- paste('facteur ', y, ' -')
@@ -58,10 +61,10 @@ if ( qui == 3 ) {
     }
     classes <- c(1:clnb)
     maxchi <- 1
-    cex.par <- NULL
+    cex.par <- rep(taillecar/10, nrow(table.in))
 } else {
     if ( what == 0 ) table.in <- afc$rowcoord
-    if ( what == 1 ) table.in <- afc$rowcrl*2
+    if ( what == 1 ) table.in <- afc$rowcrl
     rownames(table.in) <- afc$rownames
     tablechi <- chistabletot
     rn.keep <- c()
@@ -73,21 +76,22 @@ if ( qui == 3 ) {
         ry <- range(table.in[,2], na.rm = TRUE)
         rz <- range(table.in[,3], na.rm = TRUE)
     }
+    eff <- rowSums(afctable)
     if (!is.null(debsup)) {
         if ( qui == 0 ) {
            table.in <- table.in[1:(debsup-1),]
            tablechi <- tablechi[1:(debsup-1),]
-           cex.par <- afc$rowmass[1:(debsup-1)]
+           cex.par <- eff[1:(debsup-1)]
         }
         if ( qui == 1 ) {
            table.in <- table.in[debsup:(debet-1),] 
            tablechi <- tablechi[debsup:(debet-1),]
-           #cex.par <- afc$rowmass[debsup:(debet-1)]
+           cex.par <- eff[debsup:(debet-1)]
         }
         if ( qui == 2 ) {
            table.in <- table.in[debet:nrow(table.in),] 
            tablechi <- tablechi[debet:nrow(tablechi),]
-           #cex.par <- afc$rowmass[debet:nrow(tablechi)]
+           cex.par <- eff[debet:nrow(afctable)]
         }
     }
     
@@ -96,30 +100,17 @@ if ( qui == 3 ) {
             if (!is.null(debet)) {
                 table.in <- table.in[1:(debet-1),] 
                 tablechi <- tablechi[1:(debet-1),]
-                cex.par <- afc$rowmass[1:(debet-1)]
+                cex.par <- eff[1:(debet-1)]
             } else {
-                cex.par <- afc$rowmass
+                cex.par <- eff
             }
         } else {
             table.in <- table.in[debet:nrow(table.in),]
             tablechi <- tablechi[debet:nrow(tablechi),]
-            #cex.par <- afc$rowmass[debet:nrow(tablechi)]
+            cex.par <- eff[debet:nrow(afctable)]
         }
     }
         
-#    if (over) {
-#        rn <- rownames(table.in)
-#        rownames(table.in) <- 1:nrow(table.in)
-#        table.in <- unique(table.in)
-#        rn.keep <- as.numeric(rownames(table.in))
-#        rownames(table.in) <- rn[rn.keep]
-#        tablechi <- tablechi[rn.keep,]
-#        if (qui==0) {
-#            cex.par <- cex.par[rn.keep]
-#        } else {
-#            cex.par <- NULL
-#        }
-#    } 
     if (do.select.nb) {
         if (select.nb > nrow(table.in)) select.nb <- nrow(table.in)
         row.keep <- select_point_nb(tablechi, select.nb)
@@ -139,7 +130,16 @@ if ( qui == 3 ) {
     }
     classes <- apply(tablechi, 1, which.max)
     maxchi <- apply(tablechi, 1, max)
-    
+    infp <-  which(is.infinite(maxchi) & maxchi > 0)
+    if (length(infp)) {
+        maxchi[infp] <- NA
+        if (!length(infp) == length(maxchi)) {
+            valmax <- max(maxchi, na.rm = TRUE)
+        } else {
+            valmax <- 8
+        }
+        maxchi[infp] <- valmax + 2
+    } 
     if (cex.txt) {
         #row.keep <- append(row.keep, rn.keep)
         #row.keep <- unique(row.keep)
@@ -149,25 +149,31 @@ if ( qui == 3 ) {
         cex.par <- maxchi
         cex.par <- norm.vec(cex.par, tchi.min/10, tchi.max/10)
     } else {
-        cex.par <- NULL
+        cex.par <- rep(taillecar/10, nrow(table.in))
     }
 }
 
+if (is.null(xminmax)) {
+        xminmax <- c(min(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,1], na.rm = TRUE)), max(table.in[,1], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,1], na.rm = TRUE)))
+    }
+    if (is.null(yminmax)) {
+        yminmax <- c(min(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * min(table.in[,2], na.rm = TRUE)), max(table.in[,2], na.rm = TRUE) + ((max(cex.par)/10) * max(table.in[,2], na.rm = TRUE)))
+    }
 
 if (typegraph == 0) {
 
-    open_file_graph(fileout, width = width, height = height)
+    open_file_graph(fileout, width = width, height = height, svg = do.svg)
     parcex <- taillecar/10
     par(cex = parcex)
     if (over) {
     table.in <- table.in[order(cex.par, decreasing = TRUE),]
     classes <- classes[order(cex.par, decreasing = TRUE)]
     cex.par <- cex.par[order(cex.par, decreasing = TRUE)]
-    table.in <- stopoverlap(table.in, cex.par=cex.par)
+    table.in <- stopoverlap(table.in, cex.par=cex.par, xlim = xminmax, ylim = yminmax)
     classes <- classes[table.in[,4]]
     cex.par <- cex.par[table.in[,4]]
     }
-    make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par)
+    make_afc_graph(table.in, classes, clnb, xlab, ylab, cex.txt = cex.par, xminmax = xminmax, yminmax = yminmax)
 
 } else {